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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
65
DNase-seq
23
total RNA-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
223
DNA binding
72
DNA accessibility
30
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
71
June, 2019
31
May, 2019
25
July, 2019
23
August, 2017
14
February, 2020
13
October, 2017
7
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
284
bigWig
267
bam
263
bed narrowPeak
174
bigBed narrowPeak
112
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
32
tsv
18
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
345
Homo sapiens
Biosample type
318
tissue
27
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
345
AMP
Genome assembly (visualization)
267
GRCh38
231
hg19
Lab
345
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
brain
17
14
1
1
1
skeletal muscle tissue
19
1
4
1
1
1
1
layer of hippocampus
20
muscle of leg
6
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
7
1
1
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
skeletal muscle cell
1
1
1
+ See 2 more…
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