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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
total RNA-seq
48
ATAC-seq
32
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
129
DNA binding
94
Transcription
80
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
86
histone
86
histone modification
53
broad histone mark
33
narrow histone mark
31
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
57
April, 2019
44
October, 2019
36
February, 2023
35
June, 2019
21
May, 2019
15
July, 2019
14
February, 2021
5
March, 2020
Available data
180
bam
178
bed narrowPeak
142
bigWig
120
bigBed narrowPeak
96
tsv
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
319
Homo sapiens
Biosample type
296
tissue
14
cell line
9
primary cell
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
319
AMP
Genome assembly (visualization)
184
GRCh38
146
hg19
Lab
319
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
319 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
coronary artery
5
36
2
tibial nerve
35
1
2
heart
14
1
18
1
1
1
heart right ventricle
13
17
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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