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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
11
ChIP-seq
8
ATAC-seq
3
DNase-seq
1
RRBS
Assay category
57
Transcription
11
DNA accessibility
11
DNA binding
1
DNA methylation
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
8
June, 2019
5
July, 2019
1
May, 2021
Available data
79
bam
67
bigWig
57
tsv
18
bed narrowPeak
6
bigBed narrowPeak
6
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
80
Homo sapiens
Biosample type
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
0
nerve
Project
80
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
80
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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