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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397ChIP-seq
  • 19total RNA-seq
  • 3Hi-C
  • 2ATAC-seq
  • 2DNase-seq
  • 2STARR-seq
  • 2pCHi-C
  • 1RRBS
  • 1WGBS
  • 1whole genome sequencing assay
Assay category
  • 397DNA binding
  • 19Transcription
  • 4DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
  • 1DNA sequencing
Target of assay
  • 299transcription factor
  • 82recombinant protein
  • 62control
  • 56RNA binding protein
  • 33histone
  • 33histone modification
  • 21chromatin remodeller
  • 17broad histone mark
  • 16narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 46November, 2018
  • 35August, 2021
  • 15December, 2017
  • 5December, 2019
  • 5January, 2019
  • 2February, 2021
  • 2July, 2019
  • 2June, 2019
  • 1December, 2018
  • 1May, 2020
  • 1October, 2019
Available data
  • 393bam
  • 382fastq
  • 357bigWig
  • 328bed narrowPeak
  • 309bigBed narrowPeak
  • 60bed broadPeak
  • 60bigBed broadPeak
  • 20tsv
  • 16tagAlign
  • 7bed bed3+
  • 3tar
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1bedpe bed3+
  • 1hdf5
  • 1hic
  • 1vcf
Organism
  • 430Homo sapiens
Biosample type
  • tissue
  • 401cell line
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 0nerve
Project
  • 430AMP
Genome assembly (visualization)
  • 357hg19
  • 293GRCh38
Lab
  • 399AMP-T2D consortium
  • 31Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

430 results

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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
DNase-seq
STARR-seq
pCHi-C
RRBS
WGBS
whole genome sequencing assay
cell line
HepG237814212211
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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