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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
39
ATAC-seq
12
total RNA-seq
7
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
108
DNA binding
46
DNA accessibility
18
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
52
broad histone mark
27
control
26
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
68
October, 2019
50
May, 2019
35
February, 2023
7
July, 2019
6
August, 2021
4
February, 2020
3
June, 2019
3
March, 2020
Available data
129
bam
127
bed narrowPeak
101
bigWig
88
bigBed narrowPeak
19
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
176
Homo sapiens
Biosample type
176
tissue
66
cell line
31
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
136
GRCh38
101
hg19
Lab
176
AMP-T2D consortium
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
1
2
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
pulmonary artery
2
See all biosamples
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