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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
104
ChIP-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
406
Transcription
104
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
13
transcription factor
5
RNA binding protein
Date released
386
February, 2021
53
August, 2017
41
October, 2019
23
October, 2018
12
July, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
484
bam
456
bigWig
406
tsv
44
fastq
40
bed narrowPeak
36
bigBed narrowPeak
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
525
Homo sapiens
Biosample type
523
tissue
2
primary cell
1
in vitro differentiated cells
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
526
AMP
Genome assembly (visualization)
449
hg19
447
GRCh38
Lab
526
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
526 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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