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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
153
total RNA-seq
5
DNase-seq
3
small RNA-seq
2
ATAC-seq
Assay category
167
DNA binding
156
Transcription
7
DNA accessibility
Target of assay
74
histone modification
73
histone
54
control
44
narrow histone mark
39
transcription factor
29
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
48
December, 2017
48
October, 2019
26
August, 2017
7
July, 2019
7
November, 2018
1
March, 2020
Available data
330
bam
296
bigWig
159
tsv
140
bed narrowPeak
83
fastq
75
bigBed narrowPeak
70
tagAlign
8
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
330
Homo sapiens
Biosample type
366
cell line
330
tissue
15
in vitro differentiated cells
12
primary cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
330
AMP
Genome assembly (visualization)
277
hg19
269
GRCh38
Lab
330
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
330 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
tissue
liver
122
147
2
1
tibial nerve
35
4
2
1
right lobe of liver
10
2
1
2
1
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