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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
total RNA-seq
35
ChIP-seq
13
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
67
Transcription
35
DNA binding
15
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
150
February, 2021
42
October, 2019
8
February, 2023
1
February, 2020
1
May, 2021
Available data
108
bam
89
bigWig
88
txt
63
tsv
35
bed narrowPeak
26
bigBed narrowPeak
4
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
202
Homo sapiens
Biosample type
201
tissue
1
primary cell
Organ
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
201
AMP
1
T1D
Genome assembly (visualization)
101
hg19
97
GRCh38
Lab
201
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
lab.title!!
AMP-T2D consortium
organ_slims!
pancreas
BIOSAMPLE
ASSAY
202 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
35
1
2
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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