Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 83ATAC-seq
  • 66total RNA-seq
  • 47WGBS
  • 10MeRIP-seq
  • 10snATAC-seq
  • 5Hi-C
Assay category
  • 93DNA accessibility
  • 66Transcription
  • 47DNA methylation
  • 53D chromatin structure
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 104May, 2022
  • 55February, 2023
  • 19September, 2020
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 6February, 2021
  • 5March, 2019
  • 3October, 2022
  • 2August, 2021
  • 1May, 2021
  • 1October, 2017
Available data
  • 95fastq
  • 80zippedFastqFolder
  • 25bam
  • 18bed narrowPeak
  • 11bigWig
  • 7tsv
  • 6txt
  • 4bedpe bed3+
  • 4hic
  • 3cool
  • 2bed broadPeak
  • 1bedpe
Organism
  • 221Homo sapiens
Biosample type
  • 152primary cell
  • 63tissue
  • 6cell line
Organ
  • 221pancreas
  • 191kidney
  • 158epithelium
  • 71liver
  • 40heart
  • 19lung
  • blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
  • 0nerve
Project
  • 152HPAP
  • 43AMP
  • 26T1D
Genome assembly (visualization)
  • 25hg19
  • 13GRCh38
Lab
  • AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 6inconsistent ontology term
  • 3audit script error
lab.title!
  • AMP-T2D consortium
organ_slims!
  • blood
BIOSAMPLE
ASSAY

221 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
MeRIP-seq
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell2942311
pancreatic beta cell1611161
pancreatic acinar cell41
tissue
islet of Langerhans3412462
pancreas14
cell line
EndoC_BH16
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego