Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
total RNA-seq
35
ChIP-seq
13
ATAC-seq
2
DNase-seq
Assay category
67
Transcription
35
DNA binding
15
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
150
February, 2021
42
October, 2019
8
February, 2023
1
February, 2020
Available data
108
bam
89
bigWig
88
txt
63
tsv
35
bed narrowPeak
26
bigBed narrowPeak
4
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
201
Homo sapiens
Biosample type
201
tissue
Organ
725
pancreas
720
liver
679
connective tissue
491
adipose tissue
366
epithelium
353
heart
286
brain
236
vasculature
230
blood vessel
163
kidney
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
201
AMP
Genome assembly (visualization)
101
hg19
97
GRCh38
Lab
201
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
BIOSAMPLE
ASSAY
201 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
tissue
bone element
84
bone tissue
58
tibial nerve
5
35
1
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 10 more…
See all biosamples
Download