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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
10
total RNA-seq
7
DNase-seq
5
Hi-C
4
single cell RNA-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
100
DNA binding
14
Transcription
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
74
histone
74
histone modification
47
broad histone mark
27
narrow histone mark
23
control
3
RNA binding protein
3
transcription factor
Date released
63
October, 2019
45
May, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
Available data
120
bam
96
bigWig
82
bed narrowPeak
80
bigBed narrowPeak
15
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
132
Homo sapiens
Biosample type
103
tissue
29
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
97
hg19
90
GRCh38
Lab
132
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
BIOSAMPLE
ASSAY
132 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial nerve
35
5
2
1
aorta
13
1
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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