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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
5
total RNA-seq
4
DNase-seq
1
ATAC-seq
1
RRBS
Assay category
38
DNA binding
5
DNA accessibility
5
Transcription
1
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
12
control
9
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
42
October, 2019
3
November, 2017
2
June, 2019
1
February, 2020
1
July, 2019
Available data
47
bam
36
bigWig
31
bed narrowPeak
30
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
bed bed3+
3
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
43
tissue
6
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
RRBS
tissue
tibial nerve
35
5
2
1
primary cell
choroid plexus epithelial cell
3
1
1
smooth muscle cell of the brain vasculature
1
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