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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
5
total RNA-seq
4
DNase-seq
1
ATAC-seq
1
RRBS
Assay category
22
DNA binding
5
DNA accessibility
5
Transcription
1
DNA methylation
Target of assay
25
histone
25
histone modification
broad histone mark
12
control
9
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
26
October, 2019
3
November, 2017
2
June, 2019
1
February, 2020
1
July, 2019
Available data
31
bam
20
bigWig
15
bed narrowPeak
14
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
bed bed3+
3
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
27
tissue
6
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
RRBS
tissue
tibial nerve
19
5
2
1
primary cell
choroid plexus epithelial cell
3
1
1
smooth muscle cell of the brain vasculature
1
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