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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
93
single cell RNA-seq
30
DNase-seq
22
total RNA-seq
8
WGBS
4
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
118
DNA binding
116
Transcription
34
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
53
broad histone mark
31
narrow histone mark
27
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
50
October, 2019
33
June, 2019
22
July, 2019
16
May, 2019
7
March, 2020
3
February, 2020
3
May, 2021
1
February, 2023
Available data
177
bam
151
bigWig
125
bed narrowPeak
118
tsv
115
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
284
Homo sapiens
Biosample type
272
tissue
11
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
284
AMP
Genome assembly (visualization)
150
GRCh38
147
hg19
Lab
284
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
284 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
2
1
1
1
tibial nerve
35
2
5
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
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primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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