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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
93
single cell RNA-seq
30
DNase-seq
22
total RNA-seq
8
WGBS
4
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
158
DNA binding
116
Transcription
34
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
119
histone
119
histone modification
73
broad histone mark
46
narrow histone mark
27
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
50
October, 2019
40
May, 2024
33
June, 2019
22
July, 2019
16
May, 2019
7
March, 2020
3
February, 2020
3
May, 2021
1
February, 2023
Available data
191
bigWig
177
bam
165
bed narrowPeak
118
tsv
115
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
324
Homo sapiens
Biosample type
312
tissue
11
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
324
AMP
Genome assembly (visualization)
190
GRCh38
147
hg19
Lab
284
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
vasculature
adrenal gland
BIOSAMPLE
ASSAY
324 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
2
1
1
1
left cardiac atrium
40
18
1
tibial nerve
35
2
5
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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