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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
59
total RNA-seq
45
ATAC-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
69
DNA binding
61
Transcription
51
DNA accessibility
Target of assay
44
histone
44
histone modification
30
broad histone mark
20
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
68
October, 2019
66
February, 2021
35
February, 2023
5
May, 2019
3
February, 2020
July, 2019
2
August, 2021
2
June, 2019
Available data
141
bam
113
bigWig
100
bed narrowPeak
61
tsv
51
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
181
Homo sapiens
Biosample type
115
tissue
66
cell line
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
181
AMP
Genome assembly (visualization)
156
GRCh38
121
hg19
Lab
181
AMP-T2D consortium
month_released!
July, 2019
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
5
1
35
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
52
8
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