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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
46
ATAC-seq
25
ChIP-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
63
Transcription
52
DNA accessibility
25
DNA binding
Target of assay
histone
44
histone modification
30
broad histone mark
20
control
14
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
3
February, 2020
3
July, 2019
3
May, 2019
2
August, 2021
2
June, 2019
Available data
100
bam
72
bigWig
63
tsv
57
bed narrowPeak
7
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
140
Homo sapiens
Biosample type
72
tissue
66
cell line
2
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
115
GRCh38
80
hg19
Lab
140
AMP-T2D consortium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial nerve
5
1
11
2
tibial artery
1
1
5
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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