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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
95
DNA binding
5
Transcription
4
DNA accessibility
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
42
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
1
February, 2020
1
January, 2018
Available data
102
bam
86
bigWig
81
bed narrowPeak
80
bigBed narrowPeak
60
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
104
Homo sapiens
Biosample type
61
cell line
43
tissue
Organ
935
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
353
heart
348
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
86
hg19
85
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent control
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
60
1
tissue
tibial nerve
35
5
1
2
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