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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
single cell RNA-seq
4
total RNA-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
29
DNA binding
10
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
29
control
Date released
16
October, 2019
11
May, 2019
6
August, 2021
4
February, 2020
2
February, 2021
2
March, 2020
1
July, 2019
Available data
30
bam
11
tsv
2
tagAlign
1
bedpe bed3+
1
hic
Organism
42
Homo sapiens
Biosample type
40
tissue
2
cell line
Organ
311
pancreas
260
liver
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
GRCh38
166
hg19
Lab
42
AMP-T2D consortium
assembly!
GRCh38
organ_slims!
epithelium
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
11
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
2
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