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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
64
total RNA-seq
47
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
114
DNA binding
70
Transcription
54
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
52
broad histone mark
29
control
26
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
68
October, 2019
66
February, 2021
50
May, 2019
35
February, 2023
7
July, 2019
6
August, 2021
4
February, 2020
3
June, 2019
3
March, 2020
Available data
195
bam
157
bigWig
139
bed narrowPeak
88
bigBed narrowPeak
71
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
242
Homo sapiens
Biosample type
176
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
242
AMP
Genome assembly (visualization)
200
GRCh38
165
hg19
Lab
242
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
242 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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