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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
11
total RNA-seq
6
single cell RNA-seq
5
Hi-C
3
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
119
DNA binding
17
Transcription
5
3D chromatin structure
4
DNA accessibility
2
DNA methylation
Target of assay
89
histone
89
histone modification
59
broad histone mark
30
narrow histone mark
28
control
2
RNA binding protein
2
transcription factor
Date released
81
October, 2019
45
May, 2019
8
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
1
November, 2017
Available data
146
bam
117
bigWig
103
bed narrowPeak
100
bigBed narrowPeak
18
tsv
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
148
Homo sapiens
Biosample type
127
tissue
21
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
Genome assembly (visualization)
106
hg19
100
GRCh38
Lab
148
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed broadPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial nerve
35
5
1
tibial artery
23
1
1
aorta
13
1
4
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
See all biosamples
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