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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
34
ChIP-seq
6
single cell RNA-seq
4
total RNA-seq
3
Hi-C
2
pCHi-C
1
WGBS
Assay category
43
DNA accessibility
34
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
31
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
22
October, 2019
11
May, 2019
10
February, 2021
6
August, 2021
4
February, 2020
4
March, 2020
1
July, 2019
Available data
222
bam
bigWig
156
bed narrowPeak
105
bigBed narrowPeak
74
tsv
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
93
Homo sapiens
Biosample type
76
tissue
10
cell line
7
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
93
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
93 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
tissue
coronary artery
35
2
1
tibial nerve
11
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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