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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
total RNA-seq
35
ChIP-seq
13
ATAC-seq
1
pCHi-C
Assay category
67
Transcription
35
DNA binding
13
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
150
February, 2021
40
October, 2019
8
February, 2023
1
February, 2020
1
May, 2021
Available data
108
bam
89
bigWig
88
txt
63
tsv
35
bed narrowPeak
26
bigBed narrowPeak
4
bed bed3
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
200
Homo sapiens
Biosample type
199
tissue
1
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
199
AMP
1
T1D
Genome assembly (visualization)
99
hg19
95
GRCh38
Lab
199
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
200 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
35
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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