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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
63
total RNA-seq
35
ChIP-seq
1
ATAC-seq
1
pCHi-C
Assay category
63
Transcription
35
DNA binding
1
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
142
February, 2021
40
October, 2019
1
February, 2020
1
May, 2021
Available data
100
bam
89
bigWig
84
txt
63
tsv
27
bed narrowPeak
26
bigBed narrowPeak
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
184
Homo sapiens
Biosample type
183
tissue
1
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
1
T1D
Genome assembly (visualization)
87
GRCh38
87
hg19
Lab
183
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
skeleton
BIOSAMPLE
ASSAY
184 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
35
1
primary cell
megakaryocyte
1
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