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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
108
ChIP-seq
85
RNA microarray
19
ATAC-seq
6
WGBS
4
DNase-seq
3
pCHi-C
3
small RNA-seq
Assay category
468
Transcription
108
DNA binding
23
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
536
February, 2021
57
August, 2017
43
October, 2019
23
October, 2018
12
July, 2019
9
February, 2023
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
550
bam
514
bigWig
464
tsv
88
txt
48
bed narrowPeak
44
fastq
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bed bed3
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
692
Homo sapiens
Biosample type
689
tissue
3
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
692
AMP
1
T1D
Genome assembly (visualization)
527
hg19
521
GRCh38
Lab
692
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
693 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
tissue
adipose tissue
382
2
3
3
1
bone element
84
bone tissue
58
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
+ See 17 more…
primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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