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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
total RNA-seq
24
ChIP-seq
13
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
67
Transcription
24
DNA binding
15
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
control
8
narrow histone mark
Date released
150
February, 2021
31
October, 2019
8
February, 2023
1
February, 2020
1
May, 2021
Available data
97
bam
89
bigWig
88
txt
63
tsv
35
bed narrowPeak
26
bigBed narrowPeak
4
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
191
Homo sapiens
Biosample type
190
tissue
1
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
190
AMP
1
T1D
Genome assembly (visualization)
101
hg19
97
GRCh38
Lab
190
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
organ_slims!
bodily fluid
target.investigated_as!
control
BIOSAMPLE
ASSAY
191 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
24
1
2
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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