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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
total RNA-seq
13
ATAC-seq
11
ChIP-seq
2
DNase-seq
1
pCHi-C
Assay category
67
Transcription
15
DNA accessibility
11
DNA binding
Target of assay
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
150
February, 2021
18
October, 2019
8
February, 2023
1
February, 2020
1
May, 2021
Available data
88
txt
84
bam
65
bigWig
63
tsv
11
bed narrowPeak
4
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
178
Homo sapiens
Biosample type
177
tissue
1
primary cell
Organ
793
pancreas
689
liver
605
connective tissue
458
adipose tissue
430
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
19
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
177
AMP
1
T1D
Genome assembly (visualization)
77
hg19
73
GRCh38
Lab
177
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
178 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
1
11
2
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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