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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
34
DNase-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
253
DNA binding
Target of assay
211
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
39
control
3
RNA binding protein
3
transcription factor
Date released
119
October, 2019
91
November, 2017
28
May, 2019
15
October, 2017
Available data
231
bam
196
bigWig
194
bed narrowPeak
118
bigBed narrowPeak
118
tagAlign
18
fastq
15
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
244
tissue
9
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
253
AMP
Genome assembly (visualization)
195
GRCh38
147
hg19
Lab
253
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
253 results
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Clear Filters
ChIP-seq
tissue
tibial nerve
35
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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