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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
34
DNase-seq
9
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
Assay category
196
DNA binding
38
DNA accessibility
16
Transcription
3
3D chromatin structure
Target of assay
190
histone
190
histone modification
114
narrow histone mark
76
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
107
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
7
October, 2017
2
November, 2018
Available data
285
bam
253
bigWig
230
bed narrowPeak
153
bigBed narrowPeak
118
tagAlign
49
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
31
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
233
tissue
20
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
253
AMP
Genome assembly (visualization)
245
GRCh38
190
hg19
Lab
253
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
tibial nerve
24
2
4
1
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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