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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
479
total RNA-seq
188
ChIP-seq
26
ATAC-seq
11
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
26
DNA accessibility
1
3D chromatin structure
Date released
10
February, 2023
5
February, 2021
4
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
July, 2019
1
November, 2019
1
November, 2020
1
October, 2017
Available data
11
bigWig
9
bed narrowPeak
6
bam
6
bed bed3
5
bed bed3+
4
bed bedgraph
4
bigBed narrowPeak
2
fastq
1
hdf5
Organism
27
Homo sapiens
Biosample type
17
in vitro differentiated cells
7
tissue
3
primary cell
Organ
161
pancreas
111
epithelium
76
kidney
51
blood vessel
51
vasculature
50
heart
45
artery
28
eye
27
liver
26
connective tissue
12
bone element
12
limb
12
skeleton
7
brain
7
musculature of body
6
adipose tissue
2
vein
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
27
AMP
Genome assembly (visualization)
27
hg19
6
GRCh38
Lab
25
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ATAC-seq
Hi-C
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
adipose tissue
3
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
tibial nerve
1
primary cell
osteoblast
2
brain pericyte
1
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