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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
14
ATAC-seq
5
total RNA-seq
3
pCHi-C
2
Capture-C
1
RRBS
Assay category
35
DNA binding
14
DNA accessibility
5
Transcription
1
DNA methylation
Target of assay
22
control
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
Date released
20
August, 2017
13
February, 2023
12
October, 2019
5
February, 2021
3
June, 2019
2
August, 2021
1
February, 2020
1
July, 2019
1
March, 2020
1
May, 2021
1
November, 2020
Available data
193
bam
bigWig
89
bed narrowPeak
82
tsv
57
fastq
44
bigBed narrowPeak
23
bed bed3+
14
tagAlign
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
60
Homo sapiens
Biosample type
39
in vitro differentiated cells
13
tissue
7
primary cell
1
stem cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
1
T1D
Genome assembly (visualization)
19
hg19
2
GRCh38
Lab
57
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Capture-C
RRBS
in vitro differentiated cells
adipocyte
20
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
tissue
tibial nerve
11
1
islet of Langerhans
1
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
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