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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
3
ATAC-seq
2
pCHi-C
2
total RNA-seq
1
DNase-seq
1
RRBS
Assay category
11
DNA binding
4
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
12
June, 2019
4
February, 2023
2
March, 2020
1
July, 2019
1
November, 2019
Available data
13
bam
11
bed narrowPeak
10
bigBed narrowPeak
10
bigWig
3
bed bed3+
2
tsv
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
20
Homo sapiens
Biosample type
13
primary cell
4
in vitro differentiated cells
2
tissue
1
stem cell
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
0
nerve
Project
20
AMP
Genome assembly (visualization)
14
hg19
11
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNase-seq
RRBS
primary cell
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
in vitro differentiated cells
immature adipocyte
2
2
tissue
adipose tissue(adipose white tissue)
1
gastric (mucosa of stomach)
1
stem cell
mesenchymal stem cell
1
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