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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
147
Transcription
66
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
49
histone
49
histone modification
26
narrow histone mark
23
broad histone mark
15
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
353
bam
326
bigWig
251
fastq
174
bed narrowPeak
161
tsv
98
bigBed narrowPeak
80
zippedFastqFolder
23
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
251
Homo sapiens
Biosample type
232
primary cell
19
in vitro differentiated cells
Organ
471
pancreas
251
epithelium
150
liver
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
12
brain
2
musculature of body
0
nerve
Project
182
AMP
69
HPAP
Genome assembly (visualization)
177
GRCh38
167
hg19
Lab
182
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
November, 2017
BIOSAMPLE
ASSAY
251 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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