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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
70
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
27
December, 2018
18
October, 2019
17
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
1
March, 2020
Available data
77
bam
61
bigWig
59
fastq
56
bed narrowPeak
55
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
88
Homo sapiens
Biosample type
60
cell line
20
tissue
8
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
8
T1D
Genome assembly (visualization)
61
hg19
60
GRCh38
Lab
80
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
histone
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
59
1
tissue
tibial nerve
11
5
1
2
esophagus
1
primary cell
peripheral blood mononuclear cell
8
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