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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
29
ATAC-seq
24
total RNA-seq
4
pCHi-C
1
RRBS
Assay category
40
DNA binding
29
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
61
October, 2019
31
February, 2023
3
June, 2019
2
February, 2020
1
July, 2019
Available data
60
bed narrowPeak
49
bam
37
bigWig
32
bigBed narrowPeak
10
tsv
6
bed bed3+
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
98
Homo sapiens
Biosample type
94
tissue
4
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
323
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
98
AMP
Genome assembly (visualization)
59
hg19
31
GRCh38
Lab
98
AMP-T2D consortium
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
tissue
tibial nerve
35
1
5
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
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