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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
20
total RNA-seq
6
DNase-seq
4
pCHi-C
2
ATAC-seq
1
RRBS
Assay category
40
DNA binding
20
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
63
October, 2019
February, 2023
7
June, 2019
2
February, 2020
1
July, 2019
Available data
49
bam
37
bigWig
33
bed narrowPeak
32
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
73
Homo sapiens
Biosample type
68
tissue
5
primary cell
Organ
890
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
354
kidney
317
heart
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
38
hg19
37
GRCh38
Lab
73
AMP-T2D consortium
month_released!
February, 2023
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
ATAC-seq
RRBS
tissue
tibial nerve
35
5
2
1
islet of Langerhans
2
14
4
1
retina
1
3
primary cell
retinal pigment epithelial cell
3
1
1
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