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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 87ChIP-seq
  • 83DNase-seq
  • 76ATAC-seq
  • 65total RNA-seq
  • 64single cell RNA-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 166DNA accessibility
  • 130Transcription
  • 87DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 54histone
  • 54histone modification
  • 31broad histone mark
  • 23control
  • 23narrow histone mark
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 130August, 2021
  • 81June, 2019
  • 72October, 2019
  • 47September, 2023
  • 23April, 2019
  • 14May, 2023
  • 11July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
  • 2March, 2020
  • 1February, 2020
Available data
  • 210bed narrowPeak
  • 186bam
  • 162bigWig
  • 130bigBed narrowPeak
  • 80bed bed3+
  • 80bed broadPeak
  • 80bigBed broadPeak
  • 64xls
  • 62txt
  • 29tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 397Homo sapiens
Biosample type
  • 342tissue
  • 36primary cell
  • 19cell line
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 350AMP
  • 47KPMP
Genome assembly (visualization)
  • 236GRCh38
  • 160hg19
Lab
  • 206AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 23inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

397 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney27137549646111
tibial nerve35215
renal cortex interstitium11
renal pelvis10
right kidney10
primary cell
epithelial cell of proximal tubule10111
kidney epithelial cell5111
kidney tubule cell31
kidney glomerular epithelial cell21
renal cortical epithelial cell111
cell line
RCC 7860 HIF1a re-expression41
RCC 7860 vector311
RCC 7860 HIF2a over-expression31
HEK293T2
glomerular visceral epithelial cell11
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