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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
35
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
59
DNA binding
43
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
69
October, 2019
31
June, 2019
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
106
bam
85
bed narrowPeak
84
bigWig
77
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
114
tissue
Organ
863
pancreas
790
liver
665
connective tissue
490
adipose tissue
431
epithelium
366
heart
329
kidney
255
brain
185
vasculature
180
blood vessel
136
artery
114
limb
80
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
114
AMP
Genome assembly (visualization)
90
GRCh38
89
hg19
Lab
114
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
May, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of arm
17
muscle of leg
12
1
gastrocnemius medialis
1
4
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