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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
34
DNase-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
41
DNA accessibility
36
DNA binding
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
11
control
9
narrow histone mark
Date released
43
October, 2019
32
June, 2019
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
81
bam
65
bed narrowPeak
64
bigWig
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
88
Homo sapiens
Biosample type
88
tissue
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
349
kidney
332
heart
258
brain
186
vasculature
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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