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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
37
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
79
DNA binding
46
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
24
control
15
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
69
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
131
bam
101
bigWig
100
bed narrowPeak
91
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
24
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
140
Homo sapiens
Biosample type
140
tissue
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
349
kidney
332
heart
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
107
GRCh38
104
hg19
Lab
140
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
spleen
20
1
1
2
1
muscle of arm
17
muscle of leg
13
1
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