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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
43
DNA binding
34
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
42
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
2
February, 2020
Available data
81
bam
69
bigWig
64
bed narrowPeak
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
88
Homo sapiens
Biosample type
88
tissue
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
68
GRCh38
68
hg19
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
5
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
forelimb muscle
1
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