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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
36
DNase-seq
9
ATAC-seq
total RNA-seq
4
Hi-C
1
WGBS
Assay category
67
DNA binding
45
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
control
16
narrow histone mark
Date released
67
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
Available data
111
bam
93
bed narrowPeak
88
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
117
Homo sapiens
Biosample type
117
tissue
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
117
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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