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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
DNase-seq
11
total RNA-seq
6
Hi-C
5
RRBS
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
74
DNA binding
36
DNA accessibility
14
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
43
June, 2019
41
October, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
Available data
98
bam
97
bigWig
86
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
137
Homo sapiens
Biosample type
123
tissue
14
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
102
hg19
83
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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