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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
34
DNase-seq
10
total RNA-seq
6
Hi-C
4
RRBS
2
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
64
DNA binding
37
DNA accessibility
12
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
49
histone
49
histone modification
32
broad histone mark
17
narrow histone mark
15
control
Date released
42
October, 2019
32
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
88
bigWig
86
bam
78
bed narrowPeak
64
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
15
tagAlign
12
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
125
Homo sapiens
Biosample type
125
tissue
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
92
hg19
73
GRCh38
Lab
125
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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