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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
35
DNase-seq
8
total RNA-seq
2
ATAC-seq
2
small RNA-seq
1
WGBS
Assay category
51
DNA binding
37
DNA accessibility
10
Transcription
1
DNA methylation
Target of assay
51
histone
51
histone modification
32
broad histone mark
19
narrow histone mark
Date released
41
June, 2019
31
October, 2019
13
August, 2017
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
99
bam
99
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
99
Homo sapiens
Biosample type
88
tissue
11
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
99
AMP
Genome assembly (visualization)
98
hg19
84
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
tissue
tibial nerve
24
2
4
1
muscle of leg
6
13
1
muscle of arm
17
skeletal muscle tissue
13
1
1
1
psoas muscle
2
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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