Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
61
total RNA-seq
47
ATAC-seq
7
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
89
DNA binding
63
Transcription
54
DNA accessibility
2
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
28
control
16
narrow histone mark
11
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
68
October, 2019
66
February, 2021
35
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
June, 2019
1
March, 2020
1
October, 2017
Available data
168
bam
132
bigWig
115
bed narrowPeak
64
bigBed narrowPeak
64
tsv
24
fastq
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
209
Homo sapiens
Biosample type
141
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
209
AMP
Genome assembly (visualization)
175
GRCh38
138
hg19
Lab
209
AMP-T2D consortium
BIOSAMPLE
ASSAY
209 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
spleen
20
1
1
2
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
Download