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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
35
DNase-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
38
DNA accessibility
38
DNA binding
14
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
broad histone mark
21
narrow histone mark
17
control
Date released
39
June, 2019
26
October, 2019
14
August, 2017
10
July, 2019
5
March, 2020
3
February, 2020
3
May, 2019
2
May, 2022
1
January, 2018
Available data
75
bam
67
bigWig
55
bed narrowPeak
49
bigBed narrowPeak
40
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
14
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
103
Homo sapiens
Biosample type
93
tissue
10
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
72
hg19
60
GRCh38
Lab
103
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
19
2
5
1
skeletal muscle tissue
10
1
4
1
1
1
1
muscle of arm
17
muscle of leg
3
13
1
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
2
1
1
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