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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
15
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
46
DNA accessibility
15
DNA binding
Target of assay
6
histone
6
histone modification
6
narrow histone mark
5
transcription factor
4
control
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
5
May, 2019
4
October, 2019
2
August, 2021
2
July, 2019
2
June, 2019
1
February, 2020
1
March, 2020
Available data
75
bam
63
bigWig
57
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
66
cell line
51
tissue
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
106
GRCh38
71
hg19
Lab
118
AMP-T2D consortium
organ_slims!
limb
epithelium
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
primary cell
smooth muscle cell of the coronary artery
1
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