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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
7
ATAC-seq
4
total RNA-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
24
DNA binding
8
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
10
histone
10
histone modification
8
control
6
narrow histone mark
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
Date released
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
4
October, 2019
2
February, 2021
2
March, 2020
1
October, 2017
Available data
26
bam
24
fastq
16
bed narrowPeak
16
bigWig
13
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
40
Homo sapiens
Biosample type
40
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
40
AMP-T2D consortium
organ_slims!
limb
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
tissue
spleen
20
1
2
1
1
islet of Langerhans
4
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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