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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
18
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
18
DNA binding
4
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
November, 2018
1
October, 2017
Available data
423
bam
422
bigWig
398
tsv
23
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
422
Homo sapiens
Biosample type
420
tissue
2
primary cell
Organ
611
pancreas
562
connective tissue
528
liver
422
adipose tissue
292
epithelium
223
heart
214
brain
148
vasculature
144
blood vessel
130
kidney
90
limb
85
artery
58
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
28
embryo
18
ureter
16
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
0
ovary
Project
422
AMP
Genome assembly (visualization)
423
hg19
422
GRCh38
Lab
422
AMP-T2D consortium
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
422 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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